Rice University



Found 879 results
Sinko W., Lindert S., McCammon J.A.  2013.  Accounting for Receptor Flexibility and Enhanced Sampling Methods in Computer-Aided Drug Design. Chemical Biology & Drug Design. 81:41-49.
Basan M., Elgeti J., Hannezo E., Rappel W.J, Levine H..  2013.  Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing. Proc. Nat. Acad. Sci. USA. 110:2452-2459.
Baxter E.L, Zuris J.A, Wang C., Vo P.LT, Axelrod H.L, Cohen A.E, Paddock M.L, Nechushtai R., Onuchic J.N, Jennings P.A.  2013.  Allosteric control in a metalloprotein dramatically alters function. Proc. Nat. Acad. Sci. USA. 110:948-953.
Jeanne J.M, Sharpee T.O, Gentner T.Q.  2013.  Associative Learning Enhances Population Coding by Inverting Interneuronal Correlation Patterns. Neuron. 78:352-363.
Setny P., Baron R., McCammon J.A.  2013.  Comment on 'Molecular driving forces of the pocket-ligand hydrophobic association' by G. Graziano, Chem. Phys. Lett. 533 (2012) 95. Chem. Phys. Lett.. 555:306-309.
Whitford P.C, Blanchard S.C, Cate J.HD, Sanbonmatsu K.Y.  2013.  Connecting the Kinetics and Energy Landscape of tRNA Translocation on the Ribosome. Plos Comp. Biol.. 9
Camley B.A, Brown F.LH.  2013.  Diffusion of complex objects embedded in free and supported lipid bilayer membranes: role of shape anisotropy and leaflet structure. Soft Matter. 9:4767-4779.
Volman V., Bazhenov M., Sejnowski T.J.  2013.  Divide and Conquer: Functional Segregation of Synaptic Inputs by Astrocytic Microdomains Could Alleviate Paroxysmal Activity Following Brain Trauma. Plos Comp. Biol.. 9
Kim M.O, Nichols S.E, Wang Y., McCammon J.A.  2013.  Effects of histidine protonation and rotameric states on virtual screening of M-tuberculosis RmlC. J. Comp. Aided Molec. Design. 27:235-246.
Purdon P.L, Pierce E.T, Mukamel E.A, Prerau M.J, Walsh J.L, Wong K.FK, Salazar-Gomez A.F, Harrell P.G, Sampson A.L, Cimenser A. et al..  2013.  Electroencephalogram signatures of loss and recovery of consciousness from propofol. Proc. Nat. Acad. Sci. USA. 110:E1142-E1151.
Guo Z.J, Li B., Dzubiella J., Cheng L.T, McCammon J.A, Che J.W.  2013.  Evaluation of Hydration Free Energy by Level-Set Variational Implicit-Solvent Model with Coulomb-Field Approximation. J. Chem. Theor. Comp.. 9:1778-1787.
Kinney J.P, Spacek J., Bartol T.M, Bajaj C.L, Harris K.M, Sejnowski T.J.  2013.  Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil. J. Comp. Neurology. 521:448-464.
Bai F., Xu Y.C, Chen J., Liu Q.F, Gu J.F, Wang X.C, Ma J.P, Li H.L, Onuchic J.N, Jiang H.L.  2013.  Free energy landscape for the binding process of Huperzine A to acetylcholinesterase. Proc. Nat. Acad. Sci. USA. 110:135-140.
Zheng W.H, Schafer N.P, Wolynes P.G.  2013.  Frustration in the energy landscapes of multidomain protein misfolding. Proc. Nat. Acad. Sci. USA. 110:1680-1685.
Efrati S., Fishlev G., Bechor Y., Volkov O., Bergan J., Kliakhandler K., Kamiager I., Gal N., Friedman M., Ben-Jacob E. et al..  2013.  Hyperbaric Oxygen Induces Late Neuroplasticity in Post Stroke Patients - Randomized, Prospective Trial. Plos One. 8
Andrews B.T, Capraro D.T, Sukowska J.I, Onuchic J.N, Jennings P.A.  2013.  Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins. J. Phys. Chem. Letts.. 4:180-188.
Millett K.C, Rawdon E.J, Stasiak A., Sulkowska J.I.  2013.  Identifying knots in proteins. Biochemical Society Transactions. 41:533-537.
Bransburg-Zabary S., Kenett D.Y, Dar G., Madi A., Merbl Y., Quintana F.J, Tauber A.I, Cohen I.R, Ben-Jacob E..  2013.  Individual and meta-immune networks. Physical Biology. 10
Rawdon E.J, Millett K.C, Sulkowska J.I, Stasiak A..  2013.  Knot localization in proteins. Biochemical Society Transactions. 41:538-541.
Sulkowska J.I, Noel J.K, Ramirez-Sarmiento C.A, Rawdon E.J, Millett K.C, Onuchic J.N.  2013.  Knotting pathways in proteins. Biochemical Society Transactions. 41:523-527.
Kessler DA, Levine H.  2013.  Large population solution of the stochastic Luria-Delbruck evolution model. Proceedings of the National Academy of Sciences of the United States of America Proceedings of the National Academy of Sciences of the United States of America. 110:11682-7.
Onuchic J.N, Jennings P.A, Ben-Jacob E..  2013.  Learning from cancer how to defeat bacteria. Proc. Nat. Acad. Sci. USA. 110:3212-3213.
Zhang B., Lu B.Z, Cheng X.L, Huang J.F, Pitsianis N.P, Sun X.B, McCammon J.A.  2013.  Mathematical and Numerical Aspects of the Adaptive Fast Multipole Poisson-Boltzmann Solver. Comm. Comp. Phys.. 13:107-128.
Wang S.S, Wolynes P.G.  2013.  Microscopic theory of the glassy dynamics of passive and active network materials. Journal of Chemical Physics. 138
Gelimson A., Cremer J., Frey E..  2013.  Mobility, fitness collection, and the breakdown of cooperation. Physical Review E. 87