Rice University

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BCC

Publications

Found 879 results
2012
Sulkowska J., Rawdon E., Millett K., Onuchic J., Stasiak A..  2012.  Conservation of complex knotting and slipknotting patterns in proteins. Protein Sci.. 21:222-222.
Shao D.Y, Levine H., Rappel W.J.  2012.  Coupling actin flow, adhesion, and morphology in a computational cell motility model. Proc. Nat. Acad. Sci. USA. 109:6851-6856.
Schafer N.P, Hoffman R.MB, Burger A., Craig P.O, Komives E.A, Wolynes P.G.  2012.  Discrete Kinetic Models from Funneled Energy Landscape Simulations. Plos One. 7
Lammert H., Noel J.K, Onuchic J.N.  2012.  The Dominant Folding Route Minimizes Backbone Distortion in SH3. Plos Comp. Biol.. 8
Lammert H., Noel J.K, Onuchic J..  2012.  The Dominant Folding Route Minimizes Backbone Distortion in SH3. Plos Comp. Biol.. 8:e1002776.
Lammert H., Noel J.K, Onuchic J.N.  2012.  The Dominant Folding Route Minimizes Backbone Distortion in SH3. Plos Comp. Biol.. 8
Ostrov D.A, Grant B.J, Pompeu Y.A, Sidney J., Harndahl M., Southwood S., Oseroff C., Lu S., Jakoncic J., de Oliveira C.AF et al..  2012.  Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire. Proc. Nat. Acad. Sci. USA. 109:9959-9964.
Neftci E.O, Toth B., Indiveri G., Abarbanel H.DI.  2012.  Dynamic State and Parameter Estimation Applied to Neuromorphic Systems. Neural Computation. 24:1669-1694.
Kostuk M., Toth B.A, Meliza C.D, Margoliash D., Abarbanel H.DI.  2012.  Dynamical estimation of neuron and network properties II: path integral Monte Carlo methods. Biological Cybernetics. 106:155-167.
Lindert S., Kekenes-Huskey P.M, Huber G., Pierce L., McCammon J.A.  2012.  Dynamics and Calcium Association to the N-Terminal Regulatory Domain of Human Cardiac Troponin C: A Multiscale Computational Study. J. Phys. Chem. B. 116:8449-8459.
Lindert S., McCammon J.A.  2012.  Dynamics of Plasmodium falciparum enoyl-ACP reductase and implications on drug discovery. Protein Sci.. 21:1734-1745.
Zaritsky A., Natan S., Ben-Jacob E., Tsarfaty I..  2012.  Emergence of HGF/SF-Induced Coordinated Cellular Motility. Plos One. 7
Sulkowska J.I, Noel J.K, Onuchic J..  2012.  Energy Landscape of Knotted Protein Fold. Proc. Nat. Acad. Sci. USA. 109:17783-17788.
Sulkowska J.I, Noel J.K, Onuchic J.N.  2012.  Energy landscape of knotted protein folding. Proc. Nat. Acad. Sci. USA. 109:17783-17788.
Capraro D.T, Gosavi S., Roy M., Onuchic J.N, Jennings P.A.  2012.  Folding Circular Permutants of IL-1 beta: Route Selection Driven by Functional Frustration. Plos One. 7
Sulkowska J.I, Morcos F., Weigt M., Hwa T., Onuchic J.N.  2012.  Genomics-aided structure prediction. Proc. Nat. Acad. Sci. USA. 109:10340-10345.
Hu B., Kessler D.A, Rappel W.J, Levine H..  2012.  How input fluctuations reshape the dynamics of a biological switching system. Phys Rev E. 86:061910-1-061910-7.
Ortiz-Sanchez J.M, Nichols S.E, Sayyah J., Brown J.H, McCammon A., Grant B.J.  2012.  Identification of Potential Small Molecule Binding Pockets on Rho Family GTPases. Plos One. 7
Takeda K., Shao D.Y, Adler M., Charest P.G, Loomis W.F, Levine H., Groisman A., Rappel W.J, Firtel R.A.  2012.  Incoherent Feedforward Control Governs Adaptation of Activated Ras in a Eukaryotic Chemotaxis Pathway. Science Signaling. 5
Burger A., Walczak A.M, Wolynes P.G.  2012.  Influence of decoys on the noise and dynamics of gene expression. Physical Review E. 86
Loomis W.F, Fuller D., Gutierrez E., Groisman A., Rappel W.J.  2012.  Innate Non-Specific Cell Substratum Adhesion. Plos One. 7
Wang Z.M, Che J.W, Cheng L.T, Dzubiella J., Li B., McCammon J.A.  2012.  Level-Set Variational Implicit-Solvent Modeling of Biomolecules with the Coulomb-Field Approximation. J Chem Theory Comput. 8:386-397.
Lindert S., Durrant J.D, McCammon J.A.  2012.  LigMerge: A Fast Algorithm to Generate Models of Novel Potential Ligands from Sets of Known Binders. Chemical Biology & Drug Design. 80:358-365.
Lindert S., Kekenes-Huskey P.M, McCammon J.A.  2012.  Long-Timescale Molecular Dynamics Simulations Elucidate the Dynamics and Kinetics of Exposure of the Hydrophobic Patch in Troponin C. Biophys. J.. 103:1784-1789.
Hayes R.L, Noel J.K, Mohanty U., Whitford P.C, Hennelly S.P, Onuchic J.N, Sanbonmatsu K.Y.  2012.  Magnesium Fluctuations Modulate RNA Dynamics in the SAM-I Riboswitch. J. Am. Chem. Soc.. 134:12043-12063.

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