Rice University

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BCC

Publications

Found 879 results
2012
Singh J.P, Whitford P.C, Hayre N.R, Onuchic J., Cox D.L.  2012.  Massive conformation change in the prion protein: Using dual-basin structure-based models to find misfolding pathways. Proteins-Structure Function and Bioinformatics. 80:1299-1307.
Yesselman J.D, Price D.J, Knight J.L, Brooks C.L.  2012.  MATCH: An Atom-Typing Toolset for Molecular Mechanics Force Fields. J. Comp. Chem.. 33:189-202.
Noel J.K, Schug A., Verma A., Wenzel W., Garcia A.E, Onuchic J..  2012.  Mirror Images as Naturally Competing Conformations in Protein Folding. J. Phys. Chem. B. 116:6880-6888.
Noel J.K, Schug A., Verma A., Wenzel W., Garcia A.E, Onuchic J.N.  2012.  Mirror Images as Naturally Competing Conformations in Protein Folding. J. Phys. Chem. B. 116:6880-6888.
Kekenes-Huskey P.M, Lindert S., McCammon J.A.  2012.  Molecular Basis of Calcium-Sensitizing and Desensitizing Mutations of the Human Cardiac Troponin C Regulatory Domain: A Multi-Scale Simulation Study. Plos Comp. Biol.. 8
Friedman A.J, Durrant J.D, Pierce L.CT, McCorvie T.J, Timson D.J, McCammon J.A.  2012.  The Molecular Dynamics of Trypanosoma brucei UDP-Galactose 4 '-Epimerase: A Drug Target for African Sleeping Sickness. Chemical Biology & Drug Design. 80:173-181.
Madi A., Bransburg-Zabary S., Kenett D.Y, Ben-Jacob E., Cohen I.R.  2012.  THE NATURAL AUTOANTIBODY REPERTOIRE IN NEWBORNS AND ADULTS: A Current Overview. 750:198-212.
Kim M., Zhang Z.G, Okano H., Yan D.L, Groisman A., Hwa T..  2012.  Need-based activation of ammonium uptake in Escherichia coli. Molecular Systems Biology. 8
Bostani N., Kessler D.A, Shnerb N.M, Rappel W.J, Levine H..  2012.  Noise effects in nonlinear biochemical signaling. Physical Review E. 85
Rogers K.E, Keranen H., Durrant J.D, Ratnam J., Doak A., Arkin M.R, McCammon J.A.  2012.  Novel Cruzain Inhibitors for the Treatment of Chagas' Disease. Chemical Biology & Drug Design. 80:398-405.
Bucher D..  2012.  Orientational relaxation of water trapped inside C60 fullerenes. Chem. Phys. Lett.. 534:38-42.
Jana B., Hyeon C., Onuchic J.N.  2012.  The Origin of Minus-end Directionality and Mechanochemistry of Ncd Motors. Plos Comp. Biol.. 8
Zheng W.H, Schafer N.P, Davtyan A., Papoian G.A, Wolynes P.G.  2012.  Predictive energy landscapes for protein-protein association. Proc. Nat. Acad. Sci. USA. 109:19244-19249.
Sinko W., de Oliveira C.AF, Pierce L.CT, McCammon J.A.  2012.  Protecting High Energy Barriers: A New Equation to Regulate Boost Energy in Accelerated Molecular Dynamics Simulations. J. Chem. Theor. Comp.. 8:17-23.
Lewis L.D, Weiner V.S, Mukamel E.A, Donoghue J.A, Eskandar E.N, Madsen J.R, Anderson W.S, Hochberg L.R, Cash S.S, Brown E.N et al..  2012.  Rapid fragmentation of neuronal networks at the onset of propofol-induced unconsciousness. Proc. Nat. Acad. Sci. USA. 109:E3377-E3386.
Hermsen R., Deris J.B, Hwa T..  2012.  On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient. Proc. Nat. Acad. Sci. USA. 109:10775-10780.
Atencio C.A, Sharpee T.O, Schreiner C.E.  2012.  Receptive field dimensionality increases from the auditory midbrain to cortex. J. Neurophysiol.. 107:2594-2603.
Beratan D.N, Onuchic J.N.  2012.  Redox redux. Phys. Chem. Chem. Phys.. 14:13728-13728.
Klumpp S., Dong J.J, Hwa T..  2012.  On Ribosome Load, Codon Bias and Protein Abundance. Plos One. 7
Lammert H., Wolynes P.G, Onuchic J.N.  2012.  The role of atomic level steric effects and attractive forces in protein folding. Proteins-Structure Function and Bioinformatics. 80:362-373.
Noel J.K, Whitford P.C, Onuchic J..  2012.  The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function. J. Phys. Chem. B. 116:8692-8702.
Noel J.K, Whitford P.C, Onuchic J.N.  2012.  The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function. J. Phys. Chem. B. 116:8692-8702.
Nadkarni S., Bartol T.M, Stevens C.F, Sejnowski T.J, Levine H..  2012.  Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal. Proc. Nat. Acad. Sci. USA. 109:14657-14662.
Nadkarni S., Levine H., Rappel W.J.  2012.  Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal. Proc. Nat. Acad. Sci. USA. 109:14657-14662.
Mukamel E.A, Babcock H., Zhuang X.W.  2012.  Statistical Deconvolution for Superresolution Fluorescence Microscopy. Biophys. J.. 102:2391-2400.

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