Rice University

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Publications

Found 879 results
2012
Baxter E.L, Jennings P.A, Onuchic J.N.  2012.  Strand swapping regulates the iron-sulfur cluster in the diabetes drug target mitoNEET. Proc. Nat. Acad. Sci. USA. 109:1955-1960.
Wisitsorasak A., Wolynes P.G.  2012.  On the strength of glasses. Proc. Nat. Acad. Sci. USA. 109:16068-16072.
Fu X.F, Tang L.H, Liu C.L, Huang J.D, Hwa T., Lenz P..  2012.  Stripe Formation in Bacterial Systems with Density-Suppressed Motility. Physical Review Letters. 108
Jamros M.A, Oliveira L.C, Whitford P.C, Onuchic J.N, Adams J.A, Jennings P.A.  2012.  Substrate-Specific Reorganization of the Conformational Ensemble of CSK Implicates Novel Modes of Kinase Function. Plos Comp. Biol.. 8
Hu B..  2012.  Survival of the fittest or the flattest? Commentary on "Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life" by Nobuto Takeuchi and Paulien Hogeweg Physics of Life Reviews. 9:266-267.
Wang S.S, Wolynes P.G.  2012.  Tensegrity and motor-driven effective interactions in a model cytoskeleton. Journal of Chemical Physics. 136
Lawrenz M., Wereszczynski J., Ortiz-Sanchez J.M, Nichols S.E, McCammon J.A.  2012.  Thermodynamic integration to predict host-guest binding affinities. J. Comp. Aided Molec. Design. 26:569-576.
Wang J., Oliveira R.J, Chu X.K, Whitford P.C, Chahine J., Han W., Wang E.K, Onuchic J.N, Leite V.BP.  2012.  Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding. Proc. Nat. Acad. Sci. USA. 109:15763-15768.
Narayan S.M, Krummen D.E, Shivkumar K., Clopton P., Rappel W.J, Miller J.M.  2012.  Treatment of Atrial Fibrillation by the Ablation of Localized Sources CONFIRM (Conventional Ablation for Atrial Fibrillation With or Without Focal Impulse and Rotor Modulation) Trial. J. Am. College Cardiology. 60:628-636.
Schultz D., Onuchic J.N, Ben-Jacob E..  2012.  Turning death into creative force during biofilm engineering. Proc. Nat. Acad. Sci. USA. 109:18633-18634.
Schultz D., Onuchic J.N, Ben-Jacob E..  2012.  Turning death into creative force during biofilm engineering. Proc. Nat. Acad. Sci. USA. 109:18633-18634.
Schultz D., Onuchic J., Ben-Jacob E..  2012.  Turning Death into Creative Force During Biofilm Engineering. Proc. Nat. Acad. Sci. USA. 109:18633-18634.
Mukamel E.A, Schnitzer M.J.  2012.  Unified Resolution Bounds for Conventional and Stochastic Localization Fluorescence Microscopy. Physical Review Letters. 109
Haglund E., Sulkowska J.I, He Z., Feng G.S, Jennings P.A, Onuchic J.N.  2012.  The Unique Cysteine Knot Regulates the Pleotropic Hormone Leptin. Plos One. 7
Mannige R.V, Brooks C.L, Shakhnovich E.I.  2012.  A Universal Trend among Proteomes Indicates an Oily Last Common Ancestor. Plos Comp. Biol.. 8
Eichhorn C.D, Feng J., Suddala K.C, Walter N.G, Brooks C.L, Al-Hashimi H.M.  2012.  Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch. Nucl. Acids Res.. 40:1345-1355.
Baron R., Setny P., Paesani F..  2012.  Water Structure, Dynamics, and Spectral Signatures: Changes Upon Model Cavity-Ligand Recognition. J. Phys. Chem. B. 116:13774-13780.
2011
Bucher D., Grant B.J, Markwick P.R, McCammon J.A.  2011.  Accessing a Hidden Conformation of the Maltose Binding Protein Using Accelerated Molecular Dynamics. Plos Comp. Biol.. 7
Hecht I., Skoge M.L, Charest P.G, Ben-Jacob E., Firtel R.A, Loomis W.F, Levine H., Rappel W.J.  2011.  Activated Membrane Patches Guide Chemotactic Cell Motility. Plos Comp. Biol.Plos Computational Biology. 7:12.
Nechushtai R., Lammert H., Michaeli D., Eisenberg-Domovich Y., Zuris J.A, Luca M.A., Capraro D.T., Fish A., Shimshon O., Roy M. et al..  2011.  Allostery in the ferredoxin protein motif does not involve a conformational switch. Proc. Nat. Acad. Sci. USA.
Madi A., Kenett D.Y, Bransburg-Zabary S., Merbl Y., Quintana F.J, Boccaletti S., Tauber A.I, Cohen I.R, Ben-Jacob E..  2011.  Analyses of antigen dependency networks unveil immune system reorganization between birth and adulthood. ChaosChaos. 21:11.
Rowekamp R.J, Sharpee T.O.  2011.  Analyzing multicomponent receptive fields from neural responses to natural stimuli. Network-Computation in Neural Systems. 22:45-73.
Sinko W., de Oliveira C., Williams S., Van Wynsberghe A., Durrant J.D, Cao R., Oldfield E., McCammon J.A.  2011.  Applying Molecular Dynamics Simulations to Identify Rarely Sampled Ligand-bound Conformational States of Undecaprenyl Pyrophosphate Synthase, an Antibacterial Target. Chem. Biol. Drug Design. 77:412-420.
Scott M., Hwa T..  2011.  Bacterial growth laws and their applications. Curr. Opin. BiotechnologyCurr. Opin. Biotechnology. 22:559-565.
Durrant J.D., McCammon J.A.  2011.  BINANA: A Novel Algorithm for Ligand-Binding Characterization. J. Mol. Graph. Model..

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