Rice University

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Publications

Found 879 results
2003
Tsai P.S, Friedman B., Ifarraguerri A.I, Thompson B.D, Lev-Ram V., Schaffer C.B, Xiong C., Tsien R.Y, Squier J.A, Kleinfeld D..  2003.  All-optical histology using ultrashort laser pulses. Neuron. 39:27-41.
Henchman R.H., Wang H.-L., Sine S.M., Taylor P., McCammon J.A..  2003.  Asymmetric Structural Motions of the Homomeric (alpha)7 Nicotinic Receptor Ligand Binding Domain Revealed by Molecular Dynamics Simulation. Biophys. J.. 85:3007-3018.
Thorpe I.F., III C.LBrooks.  2003.  Barriers to hydride transfer in wild type and mutant dihydrofolate reductase from E-coli. J. Phys. Chem. B. 107:14042-14051.
Abarbanel H.DI, Gibb L., Huerta R., Rabinovich M.I.  2003.  Biophysical model of synaptic plasticity dynamics. Biological Cybernetics. 89:214-226.
Cerutti D.S., Wong C.F., McCammon J.A..  2003.  Brownian Dynamics Simulations of Ion Atmospheres Around Polyalanine and B-DNA: Effects of Biomolecular Dielectric. Biopolymers. 70:391-402.
Plotkin S.S., Wolynes P.G.  2003.  Buffed energy landscapes: Another solution to the kinetic paradoxes of protein folding. 100:4417-4422.
Nielsen J.E., McCammon J.A..  2003.  Calculating pKa Values in Enzyme Active Sites. 12:1894-1901.
Kockelkoren J., Levine H., Rappel W.J.  2003.  Computational approach for modeling intra- and extracellular dynamics. Physical Review E. 68:4.
Kockelkoren J., Levine H., Rappel W.-J..  2003.  Computational Approach for Modeling Intra- and Extracellular Dynamics. Physical Review E. 68:037702.
Sims P.A., Wong C.F., McCammon J.A..  2003.  A Computational Model of Binding Thermodynamics: Cyclin-dependent Kinase 2 Inhibitors. 46:3314-3325.
Zheng X., Medvedev D.M., Swanson J., Stuchebrukhov A.A..  2003.  Computer Simulation of Water in Cytochrome c Oxidase. 1557:99-107.
Miyashita O., Onuchic J.N., Okamura M.Y..  2003.  Continuum Electrostatic Model for the Binding of Cytochrome c2 to the Photosynthetic Reaction Center from Rhodobacter sphaeroides. Biochemistry. 42:11651-11660.
Acebron J.A., Rappel W.-J., Bulsara A.R..  2003.  Cooperative Dynamics in a Class of Coupled Two-Dimensional Oscillators. Physical Review E. 67:016210.
Arndt P.F., Petrov D.A., Hwa T..  2003.  Distinct Changes of Genomic Biases in Nucleotide Substitution at the Time of Mammalian Radiation. 20:1887-1896.
Arndt P.F., Burge C.B., Hwa T..  2003.  DNA sequence evolution with neighbor-dependent mutation. 10:313-322.
Peng W., Gerland U., Hwa T., Levine H..  2003.  Dynamics of Competitive Evolution on a Smooth Landscape. Physical Review Letters. 90:088103.
Peng W.Q, Gerland U., Hwa T., Levine H..  2003.  Dynamics of competitive evolution on a smooth landscape. Physical Review Letters. 90:4.
Bui J.M., Henchman R.H., McCammon J.A..  2003.  The Dynamics of Ligand Barrier Crossing Inside the Acetylcholinesterase Gorge. Biophys. J.. 85:2267-2272.
Stoycheva A.D, Onuchic J.N, Brooks C.L.  2003.  Effect of gatekeepers on the early folding kinetics of a model beta-barrel protein. Journal of Chemical Physics. 119:5722-5729.

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