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Found 1109 results
Author Title Type [ Year(Asc)]
2019
Iosub-Amir A, Bai F, Sohn YS, Song LH, Tamir S, Marjault HB, Mayer G, Karmi O, Jennings PA, Mittler R et al..  2019.  The anti-apoptotic proteins NAF-1 and iASPP interact to drive apoptosis in cancer cells. Chemical Science. 10(3)
Li XF, Jolly MK, George JT, Piente KJ, Levine H.  2019.  Computational Modeling of the Crosstalk Between Macrophage Polarization and Tumor Cell Plasticity in the Tumor Microenvironment. Frontiers in Oncology. 9
Jolly MK, Somarelli JA, Sheth M, Biddle A, Tripathi SC, Armstrong AJ, Hanash SM, Bapat SA, Rangarajan A, Levine H.  2019.  Hybrid epithelial/mesenchymal phenotypes promote metastasis and therapy resistance across carcinomas. Pharmacology & Therapeutics. 194
Lawlor N, Marquez EJ, Orchard P, Narisu N, Shamim MS, Thibodeau A, Varshney A, Kursawe R, Erdos MR, Kanke M et al..  2019.  Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic beta Cell Identity and Function. Cell Reports. 26(3)
Biswas K, Jolly MK, Ghosh A.  2019.  Stability and mean residence times for hybrid epithelial/mesenchymal phenotype. Physical Biology. 16(2)
Jia DY, George JT, Tripathi SC, Kundnani DL, Lu MY, Hanash SM, Onuchic JN, Jolly MK, Levine H.  2019.  Testing the gene expression classification of the EMT spectrum. Physical Biology. 16(2)
Bocci F, Gearhart-Serna L, Boareto M, Ribeiro M, Ben-Jacob E, Devi GR, Levine H, Onuchic JN, Jolly MK.  2019.  Toward understanding cancer stem cell heterogeneity in the tumor microenvironment. Proceedings of the National Academy of Sciences of the United States of America. 116(1)
2018
Zhang ZY, Igoshin OA, Cotter CR, Shimkets LJ.  2018.  Agent-Based Modeling Reveals Possible Mechanisms for Observed Aggregation Cell Behaviors. Biophysical Journal. 115(12)
Wu H, Wolynes P, Papoian GA.  2018.  AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins. Journal of Physical Chemistry B. 122(49)
Alallah MI, Alhemaid F, Bai F, Mothana RA, Elshikh MS, M Farah A, Ali MA, Lee J, Al-Anazi KM.  2018.  The binding proximity of methyl beta-lilacinobioside isolated from Caralluma retrospiciens with topoisomerase II attributes apoptosis in breast cancer cell line. Saudi Journal of Biological Sciences. 25(8)
Ezerski JC, Cheung MS.  2018.  CATS: A Tool for Clustering the Ensemble of Intrinsically Disordered Peptides on a Flat Energy Landscape. Journal of Physical Chemistry B. 122(49)
Krepel D, Cheng RR, Di Pierro M, Onuchic JN.  2018.  Deciphering the structure of the condensin protein complex. Proceedings of the National Academy of Sciences of the United States of America. 115(47)
Yrazu FM, Pinamonti G, Clementi C.  2018.  The Effect of Electrostatic Interactions on the Folding Kinetics of a 3-alpha-Helical Bundle Protein Family. Journal of Physical Chemistry B. 122(49)
Lu W, Schafer NP, Wolynes P.  2018.  Energy landscape underlying spontaneous insertion and folding of an alpha-helical transmembrane protein into a bilayer. Nature Communications. 9
Ghogh S, Mishra B, Kolomeisky AB, Chowdhury D.  2018.  First-passage processes on a filamentous track in a dense traffic: optimizing diffusive search for a target in crowding conditions. Journal of Statistical Mechanics-Theory and Experiment.
Jolly MK, Mani SA, Levine H.  2018.  Hybrid epithelial/mesenchymal phenotype(s): The 'fittest' for metastasis? Biochimica ET Biophysica ACTA-Reviews on Cancer. 1870(2)
Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH et al..  2018.  Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. 563(7732)
Jolly MK, Preca BT, Tripathi SC, Jia DY, George JT, Hannash SM, Brabletz T, Stemmler MP, Maurer J, Levine H.  2018.  Interconnected feedback loops among ESRP1, HAS2, CD44 regulate epithelial-mesenchymal plasticity in cancer. APL Bioengineering. 2(3)
Krylov A, Windus TL, Barnes T, Marin-Rimoldi E, Nash JA, Pritchard B, Smith DGA, Altarawy D, Saxe P, Clementi C et al..  2018.  Perspective: Computational chemistry software and its advancement as illustrated through three grand challenge cases for molecular science. Journal of Chemical Physics. 149(18)
Hruska E, , Nuska F, Kavraki LE, Clementi C.  2018.  Quantitative comparison of adaptive sampling methods for protein dynamics. Journal of Chemical Physics. 149(24)
Nishi K, Kilfoil ML, Schmidt CF, MacKintosh FC.  2018.  Reply to the 'Comment on "A symmetrical method to obtain shear moduli from microrheology"' by M. Tassieri, Soft Matter, 2018, DOI: 10.1039/C8SM00806J. Soft Matter. 14(42)
Lammert H, Wang AL, Mohanty U, Onuchic JN.  2018.  RNA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere. Journal of Physical Chemistry B. 122(49)
George JT, Levine H.  2018.  Stochastic modeling of tumor progression and immune evasion. Journal of Theoretical Biology. 458
Dutta M, Diehl MR, Onuchic JN, Jana B.  2018.  Structural consequences of hereditary spastic paraplegia disease-related mutations in kinesin. Proceedings of the National Academy of Sciences of the United States of America. 115(46)
Chen MC, Schafer NP, Wolynes P.  2018.  Surveying the Energy Landscapes of A beta Fibril Polymorphism. Journal of Physical Chemistry B. 122(49)

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