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Publications

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Abankwa D, Hanzal-Bayer M, Ariotti N, Plowman SJ, Gorfe AA, Parton RG, J. McCammon A, Hancock JF.  2008.  A novel switch region regulates H-ras membrane orientation and signal output. 27:727-35.
Abankwa D., Gorfe A.A, Hancock J.F.  2008.  Mechanisms of Ras membrane organization and signaling: Ras on a rocker. Cell Cycle. 7:2667-2673.
Abarbanel H.DI, Talathi S.S.  2006.  Neural Circuitry for Recognizing Interspike Interval Sequences. Physical Review Letters. 96:148104.
Abarbanel HDI, Creveling DR, Jeanne JM.  2008.  Estimation of parameters in nonlinear systems using balanced synchronization. Physical Review E. 77:016208.
Abarbanel H.D., Bryant P., Gill P.E., Kostuk M., Rofeh J., Singer Z., Toth B., Wong E..  2011.  The Dynamic Brain: An Exploration of Neuronal Variability and Its Functional Significance.
Abarbanel H.DI, Parlitz U..  2006.  Nonlinear Analysis of Time Series Data.
Abarbanel H.DI, Creveling D.R, Farsian R., Kostuk M..  2009.  Dynamical State and Parameter Estimation. SIAM J. Appl. Dynam. Systems. 8:1341-1381.
Abarbanel H.D.I, Gibb L., Mindlin G.B., Talathi S..  2004.  Mapping Neural Architectures onto Acoustic Features of Birdsong. J. Neurophysiol.. 92:96-110.
Abarbanel H.DI.  2007.  Nonlinear Communications Strategies.
Abarbanel H.D.I, Talathi S.S., Mindlin G., Rabinovich M., Gibb L..  2004.  Dynamical Model of Birdsong Maintenance and Control. Physical Review E. 70:051911.
Abarbanel H.D.I, Gibb L., Mindlin G., Rabinovich M., Talathi S..  2004.  Spike timing and synaptic plasticity in the premotor pathway of birdsong. Biological Cybernetics. 91:159-167.
Abarbanel H.DI.  2006.  Nonlinearity.
Abarbanel H.D.I., Talathi S.S, Gibb L., Rabinovich M.I..  2005.  Synaptic Plasticity With Discrete State Synapses. Physical Review Letters. 72:031914.
Abarbanel H.DI, Gibb L., Huerta R., Rabinovich M.I.  2003.  Biophysical model of synaptic plasticity dynamics. Biological Cybernetics. 89:214-226.
Abarbanel H.D., Kostuk M., Whartenby W..  2010.  Data Assimilation with Regularized Nonlinear Instabilities. Quarterly J. Royal Meteorological Soc.. 136:769-783.
Acebron J.A., Bulsara A.R., Rappel W.-J..  2004.  Noisy FitzHugh-Nagumo Mode: From Single Elements to Globally Coupled Networks. Physical Review E. 69:026202.
Acebron J., Rappel W-J., Bulsara A.R..  2003.  Probing a noisy oscillator system. 3:L341-L348.
Acebron J.A., Rappel W.-J., Bulsara A.R..  2003.  Cooperative Dynamics in a Class of Coupled Two-Dimensional Oscillators. Physical Review E. 67:016210.
Adcock S.A., McCammon A.J.  2006.  Molecular dynamics: Survey of methods for simulating the activity of proteins. 106:1589-1615.
Agrawal A., de Oliveira C.AF, Cheng Y.H, Jacobsen J.A, McCammon J.A, Cohen S.M.  2009.  Thioamide Hydroxypyrothiones Supersede Amide Hydroxypyrothiones in Potency against Anthrax Lethal Factor. 52:1063-1074.
Ahrens K.F., Levine H., Suhl H., Kleinfeld D..  2002.  Spectral Mixing of Rhythmic Neuronal Signals in Sensory Cortex. 99:15176-15181.
Aksoylu B., Holst M.J..  2006.  Optimality of Multilevel Preconditioners For Local Mesh Refinement in Three Dimensions. 44:1005-1025.
Alcaraz F.C., Levine E., Rittenberg V..  2006.  Conformal invariance and its breaking in a stochastic model of a fluctuating interface. :Art.No.P08003.
Alet F., Walczak A.M., Fisher M..  2006.  Exotic quantum phases and phase transitions in correlated matter. Physica A. 369:122-142.
Amaro R.E, Cheng X.L, Ivanov I., Xu D., McCammon J.A.  2009.  Characterizing Loop Dynamics and Ligand Recognition in Human- and Avian-Type Influenza Neuraminidases via Generalized Born Molecular Dynamics and End-Point Free Energy Calculations. J. Am. Chem. Soc.. 131:4702-4709.

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