2011

J. Feng; N.G. Walter; C.L. Brooks 2011 Cooperative and Directional Folding of the preQ(1) Riboswitch Aptamer Domain. J. Am. Chem. Soc.J. Am. Chem. Soc.
O.K. Dudko; T.G.W. Graham; R.B. Best 2011 Locating the Barrier for Folding of Single Molecules under an External Force. Physical Review Letters
R. Hermsen; D.W. Erickson; T. Hwa 2011 Speed, Sensitivity, and Bistability in Auto-activating Signaling Circuits. Plos Comp. Biol.
B. Hu; W. Chen; W.J. Rappel; H. Levine 2011 How geometry and internal bias affect the accuracy of eukaryotic gradient sensing. Physical Review EPhysical Review E
Y. Hao; Z.J. Zhang; D.W. Erickson; M. Huang; Y.W. Huang; J.B. Li; T. Hwa; H.L. Shi 2011 Quantifying the sequence-function relation in gene silencing by bacterial small RNAs. Proc. Nat. Acad. Sci. USAProceedings of the National Academy of Sciences of the United States of America
W.F. Li; P.G. Wolynes; S. Takada 2011 Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins. Proc. Nat. Acad. Sci. USA
M. Lawrenz; R. Baron; Y. Wang; J.A. McCammon 2011 Effects of Biomolecular Flexibility on Alchemical Calculations of Absolute Binding Free Energies. J. Chem. Theor. Comp.J. Chem. Theor. Comp.
J.D. Durrant; R. Cao; A.A. Gorfe; W. Zhu; J.K. Li; A. Sankovsky; E. Oldfield; J.A. McCammon 2011 Non-Bisphosphonate Inhibitors of Isoprenoid Biosynthesis Identified via Computer-Aided Drug Design. Chem. Biol. Drug Design
M. Sikora; J.I. Sulkowska; B.S. Witkowski; M. Cieplak 2011 BSDB: the biomolecule stretching database. Nucl. Acids Res.
B. Li; X.L. Cheng; Z.F. Zhang 2011 DIELECTRIC BOUNDARY FORCE IN MOLECULAR SOLVATION WITH THE POISSON-BOLTZMANN FREE ENERGY: A SHAPE DERIVATIVE APPROACH. SIAM J. Applied Math.