2007

C.A.F. de Oliveira; D. Hamelberg; J.A. McCammon 2007 Estimating kinetic rates from accelerated molecular dynamics simulations: Alanine dipeptide in explicit solvent as a case study. Journal of Chemical Physics
D. Vucinic; T. Sejnowski 2007 A Compact Multiphoton 3D Imaging System for Recording Fast Neuronal Activity. Plos One
X. Cheng; I. Ivanov; H. Wang; S.M. Sine; J.A. McCammon 2007 Nanosecond Time Scale Conformational Dynamics of the Human alpha7 Nicotinic Acetylcholine Receptor. Biophys. J.
N.D. Heintzman; R.K. Stuart; G. Hon; Y.T. Fu; C.W. Ching; R.D. Hawkins; L.O. Barrera; S. Van Calcar… 2007 Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
C. Hyeon; J.N. Onuchic 2007 Mechanical control of the directional stepping dynamics of the kinesin motor.
L.T. Cheng; J. Dzubiella; J.A. McCammon; B. Li 2007 Application of the level-set method to the implicit solvation of nonpolar molecules. Journal of Chemical Physics
T.J. Hou; R. Yu 2007 Molecular dynamics and free energy studies on the wild-type and double mutant HIV-1 protease complexed with amprenavir and two amprenavir-related inhibitors: Mechanism for binding and drug resistance.
D.U. Ferreiro; C.F. Cervantes; S.M.E. Truhlar; S.S. Cho; P.G. Wolynes; E.A. Komives 2007 Stabilizing I kappa B alpha by "consensus" design. Journal of Molecular Biology
C. Hyeon; J.N. Onuchic 2007 Internal Strain regulates the nucleotide binding site of the kinesin leading head.
M. Mickler; R.I. Dima; H. Dietz; C. Hyeon; D. Thirumalai; M. Rief 2007 Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations.