2006

A.L. Perryman; J.H. Lin; J.A. McCammon 2006 Restrained molecular dynamics simulations of HIV-1 protease: The first step in validating a new target for drug design. Biopolymers
P. Visco; A. Puglisi; A. Barrat; F. van Wijland; E. Trizac 2006 Energy fluctuations in vibrated and driven granular gases..
A. Hubsch; J.C. Lin; J. Pan; D.L. Cox 2006 Correlated hybridization in transition-metal complexes. Physical Review Letters
W.A. McLaughlin; T.J. Hou; W. Wang 2006 Prediction of binding sites of peptide recognition domains: An application on Grb2 and SAP SH2 domains. Journal of Molecular Biology
A. Rakos; E. Levine; D. Mukamel; D. Schutz 2006 Dynamical scaling for probe particles in a driven fluid.
T. Hou; K. Chen; W.A. McLaughlin; B. Lu; W. Wang 2006 Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain. Plos Comp. Biol.
B.R. Simler; J.N. Onuchic; C.R. Matthews; Y. Levy 2006 The folding energy landscape of the dimerization domain of Escherichia coli trp repressor: A joint experimental and theoretical investigation.
A.L. Perryman; J.H. Lin; J.A. McCammon 2006 Optimization and computational evaluation of a series of potential active site inhibitors of the V82F/I84V drug-resistant mutant of HIV-1 protease: An application of the relaxed complex method of structure-based drug design. Chem. Biol. Drug Design
K. Hamacher; J. Trylska; J.A. McCammon 2006 Dependency Map of Proteins in the Small Ribosomal Subunit.. Plos Comp. Biol.
B. Grant; A.P.C. Rodrigues; K.M. ElSawy; A.J. McCammon; L.S.D. Caves 2006 Bio3d: an R Package For The Comparative Analysis of Protein Structures.