2005

P.A. Sims; C.F. Wong; D. Vuga; J.A. McCammon; B.M. Sefton 2005 Relative Contributions of Desolvation, Inter- and Intramolecular Interactions to Binding Affinity in Protein Kinase Systems.
J.M. Finke; J.N. Onuchic 2005 Equilibrium and Kinetic Folding Pathways of a TIM Barrel With a Funneled Energy Landscape. Biophys. J.
L. Bintu; T. Hwa; J. Kondev; R. Phillips; U. Gerland; A.E. Garcia; N.E. Buchler 2005 Transcriptional regulaton by the numbers: Models.
Q.T. Nguyen; D. Kleinfeld 2005 Positive Feedback in a Brainstem Tactile Sensorimotor Loop. Neuron
B.Z. Lu; C.F. Wong 2005 Direct estimation of entropy loss due to reduced translational and rotational motions upon molecular binding. Biopolymers
Y. Levy; S.S. Cho; J.N. Onuchic; P.G. Wolynes 2005 A Survey of Flexible Protein Binding Mechanisms and their Transition States Using Native Topology Based Energy Landscapes.
T.Y. Shen; P.G. Wolynes 2005 Nonequilibrium statistical mechanical models for cytoskeletal assembly: Towards understanding tensegrity in cells. Physical Review E
B. Lu; X. Cheng; T. Hou; J.A. McCammon 2005 Calculation of the Maxwell Stress Tensor and the Poisson-Boltzmann Force on a Solvated Molecular Surface Using Hypersingular Boundary Integrals. Journal of Chemical Physics
J.E.M. Hornos; D. Schultz; G.C.P. Innocentini; J. Wang; A.M. Walczak; J.N. Onuchic; P.G. Wolynes 2005 Self-regulating gene: An exact solution. Physical Review E
J.M.J. Swanson; J. Mongan; J.A. McCammon 2005 Limitations of atom-centered dielectric functions in implicit solvent models. J. Phys. Chem. B