2004

L. Wong; S. Lieser; B. Chie-Leon; O. Miyashita; B. Aubol; J. Shaffer; J.N. Onuchic; P.A. Jennings;… 2004 Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk. Journal of Molecular Biology
J.M.J. Swanson; R.H. Henchman; J.A. McCammon 2004 Revisiting Free Energy Calculations: A Theoretical Connection to MM/PBSA and Direct Calculation of the Association Free Energy. Biophys. J.
J. Mongan; D.A. Case; J.A. McCammon 2004 Constant pH Molecular Dynamics in Generalized Born Implicit Solvent.
V.B.P. Leite; J.N. Onuchic; G. Stell; J. Wang 2004 Probing the Kinetics of Single Molecule Protein Folding. Biophys. J.
A. Vitalis; N.A. Baker; M.C. ‚J.A. 2004 ISIM: A Program for Grand Canonical Monte Carlo Simulations of the Ionic Environment of Biomolecules.
H.D.I. Abarbanel; L. Gibb; G.B. Mindlin; S. Talathi 2004 Mapping Neural Architectures onto Acoustic Features of Birdsong. J. Neurophysiol.
Y. Levy; A. Caflisch; J.N. Onuchic; P.G. Wolynes 2004 The Folding and Dimerization of HIV-1 Protease: Evidence for a Stable Monomer from Simulations. Journal of Molecular Biology
O. Miyashita; J.N. Onuchic; M.Y. Okamura 2004 Transition State and Encounter Complex for Fast Association of Cytochrome c2 with Bacterial Reaction Center.
D.Q. Zhang; R. Konecny; N.A. Baker; J.A. McCammon 2004 Electrostatic interaction between RNA and protein capsid in cowpea chlorotic mottle virus simulated by a coarse-grain RNA model and a Monte Carlo approach. Biopolymers
A.M. Fernandez-Escamilla; M.S. Cheung; M.C. Vega; M. Wilmanns; J.N. Onuchic; L. Serrano 2004 Solvation in Protein Folding Analysis: Combination of Theoretical and Experimental Approaches.