2012

N. Bostani; D.A. Kessler; N.M. Shnerb; W.J. Rappel; H. Levine 2012 Noise effects in nonlinear biochemical signaling. Physical Review E
P.C. Whitford; K.Y. Sanbonmatsu; J.N. Onuchic 2012 Biomolecular Dynamics: Order-disorder Transitions and Energy Landscapes. Reports on Progress in Physics
J.D. Yesselman; D.J. Price; J.L. Knight; C.L. Brooks 2012 MATCH: An Atom-Typing Toolset for Molecular Mechanics Force Fields. J. Comp. Chem.
A. Burger; A.M. Walczak; P.G. Wolynes 2012 Influence of decoys on the noise and dynamics of gene expression. Physical Review E
W.J. Rappel; R.A. Firtel 2012 Adaptation in a eukaryotic pathway Combining experiments with modeling. Cell Cycle

2011

J. Romanowska; J.A. McCammon; J. Trylska 2011 Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site. Plos Comp. Biol.Plos Computational Biology
J.D. Durrant; A.J. Friedman; J.A. McCammon 2011 CrystalDock: A Novel Approach to Fragment-Based Drug Design. J. Chem. Info. Model.
F.M. Ferreira; L.C. Oliveira; G.G. Germino; J.N. Onuchic; L.F. Onuchic 2011 Macromolecular assembly of polycystin-2 intracytosolic C-terminal domain. Proc. Nat. Acad. Sci. USA
D. Bucher; B.J. Grant; P.R. Markwick; J.A. McCammon 2011 Accessing a Hidden Conformation of the Maltose Binding Protein Using Accelerated Molecular Dynamics. Plos Comp. Biol.
S.S. Wang; P.G. Wolynes 2011 On the spontaneous collective motion of active matter. Proc. Nat. Acad. Sci. USAProceedings of the National Academy of Sciences of the United States of America