2022

A. Berlaga; A.B. Kolomeisky 2022 Theoretical study of active secondary transport: Unexpected differences in molecular mechanisms for antiporters and symporters. Journal of Chemical Physics (Volume 156, Issue 8, 02/28/2022)
Shubham Tripathi; Brahmachari, Sumitabha; Onuchic, Jose N.; Levine, Herbert 2022 DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases. Nucleic Acids Research (Volume 50, Issue 3, 02/22/22, Pages 1269-1279)
M. Misiura; R. Shroff; R. Thyer; A.B. Kolomeisky 2022 DLPacker: Deep learning for prediction of amino acid side chain conformations in proteins. Proteins-Structure Function and Bioinformatics (03/04/2022)
W. Jia; M.K. Jolly; H. Levine 2022 NRF2-dependent Epigenetic Regulation can Promote the Hybrid Epithelial/Mesenchymal Phenotype. Frontiers in Cell and Developmental Biology (Volume 9, Article Number 828250, 01/17/2022)
A.A. Gavrilov; R.I. Sultanov; M.D. Magnitov; A.A. Galitsyna; E.B. Dashinimaev; E.L. Aiden; S.V.… 2022 RedChlP identifies noncoding RNAs associated with genomic sites occupied by Polycomb and CTCF proteins. Proceedings of the National Academy of Sciences of the United States of America (Volume 119, Issue 1, 01/04/2022)
X. Chen; M.Y. Tsai; P.G. Wolynes 2022 The Role of Charge Density Coupled DNA Bending in Transcription Factor Sequence Binding Specificity: A Generic Mechanism for Indirect Readout. Journal of the American Chemical Society (Volume 144, Issue 4, Pages 1835-1845, 02/02/2022)
V. te Boekhorst; L.Y. Jiang; M. Mahlen; M. Meerlo; G. Dunkel; F.C. Durst; Y.J. Yang; H. Levine; B.M… 2022 Calplain-2 regulates hypoxia/HIF-induced plasticity toward amoeboid cancer cell migration and metastasis. Current Biology (Volume 32, Issue 2, Page 412-+, 01/24/2022)
B. Punia; S. Chaudhury; A.B. Kolomeisky 2022 Microscopic mechanisms of cooperative communications within single nanocatalysts. Proceedings of the National Academy of Sciences of the United States of America (Volume 119, Issue 3, 01/18/2022)
J. Tinnin; S. Bhandari; P.Z. Zhang; E. Geva; B.D. Dunietz; X. Sun; M.S. Cheung 2022 Correlating Interfacial Charge Transfer Rates with Interfacial Molecular Structure in the Tetraphenyldibenzoperiflanthene/C-70 Organic Photovoltaic System. Journal of Physical Chemistry Letters (Pages 763-769, 02/02/2022)
S. Mandal; T. Tejaswi; R. Janivara; S. Srikrishnan; P. Thakur; S. Sahoo; P. Chakraborty; S.S. Sohal… 2022 Transcriptomic-Based Quantifications of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. Biomolecules (Volume 12, Issue 1, Article Number 29, 01/2022)