2021

J. Iwahara; A.B. Kolomeisky 2021 Discrete-state stochastic kinetic models for target DNA search by proteins: Theory and experimental applications. Biophysical Chemistry (Volume 269, Article Number 106521, 02/2021)
V.G. Contessoto; R.R. Cheng; A. Hajitaheri; E. Dodero-Rojas; M.F. Mello; E. Lieberman-Aiden; P.G.… 2021 The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. Nucleic Acids Research (Volume 49, Issue D1, Pages D172-D182, 01/08/2021)
S.D. Rao; O.A. Igoshin 2021 Overlaid positive and negative feedback loops shape dynamical properties of PhoPQ two-component system. PLOS Computational Biology (Volume 17, Issue 1, Article Number e1008130, 01/2021)

2020

C.L. Wan; D.Y. Jia; Y. Zhao; W.N. Chang; S. Cao; X. Wang; C. Zhang; 2020 A data denoising approach to optimize functional clustering of single cell RNA-sequencing data. 2020 IEEE International Conference on Bioinformatics and Biomedicine (Proceedings Paper, Pages 217-222)
w. Jia; S. Tripathi; P. Chakraborty; A. Chedere; A. Rangarajan; H. Levine; M.K. Jolly 2020 Epigenetic feedback and stochastic partitioning during cell division can drive resistance to EMT. Oncotarget (Volume 11, Issue 27, Pages 2611-2624, 07/07/2020)
L.M. Gearhart-Serna; J.B. Davis; M.K. Jolly; N. Jayasundara; S.J. Sauer; R.T. Di Giulio; G.R. Devi 2020 A polycyclic aromatic hydrocarbon-enriched environmental chemical mixture enhances AhR, antiapoptotic signaling and a proliferative phenotype in breast cancer cells. Carcinogenesis (Volume 41, Issue 12, Pages 1648-1659, 12/2020)
E. Hruska; V. Balasubramanian; H. Lee; S. Jha; C. Clementi 2020 Extensible and Scalable Adaptive Sampling on Supercomputers. Journal of Chemical Theory and Computation (Volume 16, Issue 12, Pages 7915-7925, 12/08/2020)
P.R. Desai; S. Brahmachari; J.F. Marko; S. Das; K.C. Neuman 2020 Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches. Nucleic Acids Research (Volume 48, Issue 19, Pages 10713-10725, 11/04/2020)
M.C. Chen; X. Chen; S.K. Jin; W. Lu; X.C. Lin; P.G. Wolynes 2020 Protein Structure Refinement Guided by Atomic Packing Frustration Analysis. Journal of Physical Chemistry B (Volume 124, Issue 48, Pages 10889-10898, 12/03/2020)
S.A. Sevier 2020 Mechanical properties of DNA replication. Physical Review Research (Volume 2, Issue 2, Article Number 023280, 6/3/2020)