2023

C. Caranica; M.Y. Lu 2023 Article A data-driven optimization method for coarse-graining gene regulatory networks. IScience (Volume 26, Issue 2, 02/17/2023)
B.S. Ruben; S. Brahmachari; V.G. Contessoto; R.R. Cheng; A.B.O. Oliveira; M. Di Pierro; J.N. Onuchic 2023 Structural reorganization and relaxation dynamics of axially stressed chromosomes. Biophysical Journal (Volume 122, Issue 9, Pages 1633-1645, 05/02/2023)
P. Kulkarni; H.S. Wiley; H. Levine; H. Sauro; A. Anderson; S.T.C. Wong; A.S. Meyer; P. Iyengar; K.… 2023 Addressing the genetic/nongenetic duality in cancer with systems biology. Trends In Cancer (Volume 9, Issue 3, Pages 185-187, 03/2023)
Y.Y. Deng; H. Levine; X.M. Mao; L.M. Sander 2023 Collective durotaxis in cell clusters. Physica D-Nonlinear Phenomena (Volume 445, 03/2023)
A. Kramer; A.E.P. Durumeric; N.E. Charron; Y.Y. Chen; C. Clementi; F. Noe 2023 Statistically Optimal Force Aggregation for Coarse-Graining Molecular Dynamics. Journal of Physical Chemistry Letters (Volume 14, Issue 17, Pages 3970-3979, 04/20/2023)
C. Sahin; A. Motto; X.Y. Gu; H. Feyrer; D. Lama; T. Arndt; A. Rising; G.V. Gese; B.M. Haellberg; E.… 2023 Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures. Journal of The American Chemical Society (05/2023)
F.R. Adler; A.R.A. Anderson; A. Bhutan; P. Bogdan; J.J. Bravo-Cordero; A. Brock; Y. Chen; E.… 2023 Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Systems (Volume 14, Issue 4, Pages 252-257, 04/19/2023)
J.T. George; H. Levine 2023 Optimal cancer evasion in a dynamic immune microenvironment generates diverse post-escape tumor antigenicity profiles. ELIFE (Volume 12, 04/25/2023)
A. Mondal; C. Felipe; A.B. Kolomeisky 2023 Nucleosome Breathing Facilitates the Search for Hidden DNA Sites by Pioneer Transcription Factors. Journal of Physical Chemistry Letters (Pages 4096-4103, 05/17/2023 early access)
H. Teimouri; D.S. Khavas, C. Spaulding, C. Li, A.B. Kolomeisky 2023 Theoretical understanding of evolutionary dynamics on inhomogeneous networks. Physical Biology (Volume 20, Issue 3, 05/01/2023)