2024

H. Teimouri; A. Medvedeva; A.B. Kolomeisky 2024 Unraveling the role of physicochemical differences in predicting protein-protein interactions. Journal of Chemical Physics (Volume 161, Issue 4, 07/28/2024)
A. Mondal; H. Teimouri; A.B. Kolomeisky 2024 Elucidating Physicochemical Features of Holin Proteins Responsible for Bacterial Cell Lysis. Journal of Physical Chemistry B (Volume 128, Issue 29, Pages 7129-7140, 07/10/2024)
E.R. Ding; S.N. Chaudhury; J.D. Prajapati; J.N. Onuchic; K.Y. Sanbonmatsu 2024 Magnesium ions mitigate metastable states in the regulatory landscape of mRNA elements. RNA (Volume 30, Issue 8, Pages 992-1010, 08/2024)
A. Srivastava; S. Abedrabbo; J. Hassan; D. Homouz 2024 Dynamics of confined water inside carbon nanotubes based on studying tetrahedral order parameters. Scientific Reports (Volume 14, Issue 1, 07/05/2024)
J. Martin; M.L. Mateos; J.N. Onuchic; I. Coluzza; F. Morcos 2024 Machine learning in biological physics: From biomolecular prediction to design. Proceedings of the National Academy of Sciences of the United States of America (Volume 121, Issue 27, 07/02/2024)
W. Lu; J.X. Zhang; W.F. Huang; Z.Q. Zhang; X.Y. Jia; Z.Y. Wang; L.L. Shi; C.T. Li; P.G. Wolynes; S.… 2024 DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model. Nature Communications (Volume 15, Issue 1, 02/05/2024)
A.L. Wang; X.C. Lin; K.N. Chau; J.N. Onuchic; H. Levine; J.T. George 2024 RACER-m leverages structural features for sparse T cell specificity prediction. Science Advances (Volume 10, Issue 20, 05/15/2024)
T. Midha; A.B. Kolomeisky; O.A. Igoshin 2024 Insights into Error Control Mechanisms in Biological Processes: Copolymerization and Enzyme-Kinetics Revisited. Journal of Physical Chemistry B (05/2024 early access)
A. Gannavarapu; S. Arzash; I. Muntz; J.L. Shivers; A.M. Klianeva; G.H. Koenderink; F.C. Mackintosh 2024 Effects of local incompressibility on the rheology of composite biopolymer networks. European Physical Journal E (Volume 47, Issue 5, 05/2024)
C.X. Li; T.Y. Wei; M.S. Cheung; M.Y. Tsai 2024 Deciphering the Cofilin Oligomers via Intermolecular Disulfide Bond Formation: A Coarse-Grained Molecular Dynamics Approach to Understanding Cofilin's Regulation on Actin Filaments. Journal of Physical Chemistry B (Volume 128, Issue 19, Pages 4590-4601, 05/03/2024)